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Dr. Benjamin R. Karin

NSF Postdoctoral Fellow

NSF Postdoctoral Research Fellow​
Museum of Vertebrate Zoology 

Department of Environmental Science, Policy, and Management 

University of California Berkeley

I am an evolutionary biologist and herpetologist. I am fascinated by the processes that generate biodiversity and the evolutionary forces that generate unique traits. I work in remote parts of the world to track-down, develop, and study exceptional natural experiments using cutting-edge genomic methods..

 

I employ genomic tools to investigate evolutionary relationships, adaptation, speciation, biogeography, and the genetic basis of traits.  This includes the evolutionary processes that generate biodiversity and cause morphological and physiological diversity to develop, as well as linking genotype to phenotype through genome scans, transcriptomics, functional anatomy, and comparative genomics.​
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I am currently based in Dr. Ian Wang's Lab

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Benjamin  R. Karin, PhD

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Research Highlight

The geologically complex Indonesian island of Sulawesi, formed by the fusion of numerous paleo-islands, offers an exceptional natural experiment to investigate the fundamental evolutionary processes governing speciation. My recent publication in PNAS revealed that distinct speciation outcomes of secondary contact and hybridization during island fusion—from merger, to contact zones, to stable co-occurrence—were predicted by the degree of prior evolutionary divergence. Incredibly, co-occurrence was preempted by substantial body size divergence that conferred reproductive isolation and prevented further hybridization, clearly exhibiting how physical traits maintain species boundaries

About Me.

I grew up in the San Francisco Bay Area and spent much of my time exploring the mountains of California. However, it wasn't until college that I flipped a log to find and hold my first salamander as part of a natural history field course. In my senior year, I joined a four months‑long research expedition to Indonesia to investigate biogeography and diversification. The forest was bursting with life in every shape and color—from the vivid blue, red, and yellow throats of Eutropis skinks to the elongated hindlimbs and magnified size of undescribed lizards high in clouded peaks.

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I realized that understanding these traits required robust evolutionary frameworks. Pursuing my master’s and PhD, I built understudied Southeast Asian lizard systems from the ground up: field sampling, reconstructing phylogenetic trees, delimiting species, describing new taxa, and integrating genomics with morphological and geographic data for comparative analyses. I realized that existing molecular approaches weren’t built for the scale and ambition of my projects—thousands of samples, stubborn phylogenetic problems—so I developed optimized phylogenomic datasets and scalable mitochondrial genome sequencing methods that enabled evolutionary inferences previously out of reach. My dissertation on Sulawesi’s skinks applied these advancements to uncover how ancient island fusion and mountain building caused hybridization that drove morphological divergence and speciation.

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Now, applying these methodological advancements to these and new self-established study systems, my ongoing research targets exceptional traits and experimental systems worldwide. Using cutting edge methods such as population and comparative genomics, cellular imaging, and transcriptomics, I investigate the genetic basis of traits such as color and the complex regulation of diverse yet interconnected physiological pathways. Shaped by the value of field discovery and comparative analysis, I integrate across disciplines to address fundamental questions in adaptation and diversification. I am eager to expand my approach building off my strong international collaborative network to advance evolutionary genetics research.

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Through this work I have a developed a large and global collaborative network. I am a National Geographic Explorer, member of the IUCN Skink Specialist group, and part of the Museum of Vertebrate Zoology at UC Berkeley. 

Education

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2023

Ph.D. Integrative Biology

UC Berkeley

​Title: The Evolutionary and Biogeographic History of Sulawesi’s Sphenomorphine Skinks

Advisor: Dr. Jimmy A. McGuire​

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2016

M.S. Biology
Villanova University

Title: Phylogeography and Evolution of Three Species of Eutropis on Borneo

Advisors: Dr. Aaron Bauer and Dr. Todd Jackman

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2012

B.A. Integrative Biology
UC Berkeley

Highest Honors and Distinction in General Scholarship

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